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Publications

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Publié le 18 octobre 2016

2014 - ​2013 - 2012 - 2011- 2010 - 2009 - 2008- 2007

2016​

  • CREPIN A., SANTABARBARA S., CAFFARRI S. (2016) Biochemical and Spectroscopic Characterization of Highly Stable Photosystem II Supercomplexes from Arabidopsis. J. Biol. Chem. 291(36):19157-71. doi: 10.1074/jbc.M116.738054.
  • LECAMPION C., FLORIS M., FANTINO J.R., ROBAGLIA C., LALOI C. (2016) An easy method for plant polysome profiling, J. Vis. Exp. 114: e54231
  • TIBILETTI T., AUROY P., PELTIER G., CAFFARRI S. (2016). Chlamydomonas reinhardtii PsbS protein is functional and accumulates rapidly and transiently under high light. Plant Physiology,​ pp.00572.2016.
  • DOBRENEL T., CALDANA C., HANSON J., ROBAGLIA C., VINCENTZ M., VEIT B., MEYER C. (2016) TOR Signaling and Nutrient Sensing. Annual Review of Plant Biology, 67, 261–285. http://dx.doi.org/10.1146/annurev-arplant-043014-114648.
  • POLIDORI A., RAYNAL S., BARRET L.-A., DAHANI M., BARROT-IVOLOT C., JUNGAS C., FROTSCHER E., KELLER S., EBEL C., BREYTON C., BONNETÉ F.​ (2016) Sparingly Fluorinated Maltoside-Based Surfactants for Membrane-Protein Stabilization. New Journal of Chemistry. http://dx.doi.org/10.1039/C5NJ03502C.​
  • YU N., NÜTZMANN H.-W., MACDONALD J.T., MOORE B., FIELD B., BERRIRI S., TRICK M., ROSSER S.J., KUMAR S.V., FREEMONT P.S., OSBOURN A. (2016) Delineation of metabolic gene clusters in plant genomes by chromatin signatures. Nucleic Acids Res. gkw100. doi:10.1093/nar/gkw100
  • ​SUGLIANI M., ABDELKEFI H., KE H., BOUVERET E., ROBAGLIA C., CAFFARRI S., FIELD B. (2016) An ancient bacterial signaling pathway controls chloroplast function to regulate growth and development in Arabidopsis. The Plant Cell, [Internet]. 23 févr 2016; http://www.plantcell.org/content/early/2016/02/23/tpc.16.00045.abstract
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2015​

  • CREPIN A., CAFFARRI S. (2015) The specific localizations of phosphorylated Lhcb1 and Lhcb2 isoforms reveal the role of Lhcb2 in the formation of the PSI-LHCII supercomplex in Arabidopsis during state transitions. Biochim. Biophys. Acta, 1847(12):1539-1548.
  • BARRADA A., MONTANÉ M.H., ROBAGLIA C., MENAND B. (2015) Spatial Regulation of Root Growth: Placing the Plant TOR Pathway in a Developmental Perspective. Int. J. Mol. Sci., 16(8):19671-97.
  • REXIN D., MEYER C., ROBAGLIA C., VEIT B. (2015) TOR signalling in plants. Biochem. J., 470(1):1-14.
  • OUIBRAHIM L., GINER RUBIO A., MORETTI A., MONTANE M.H., MENAND B., MEYER C., ROBAGLIA C., CARANTA C. (2015) Potyviruses differ in their requirment for TOR signaling. J. Gen. Virol., 96(9):2898-903.
  • DEVERT A., FABRE N., FLORIS M., CANARD B., ROBAGLIA C., CRETE P. (2015) Primer-Dependent and Primer-Independent Initiation of Double Stranded RNA Synthesis by Purified Arabidopsis RNA-Dependent RNA Polymerases RDR2 and RDR6. PloS one, 10(3): e0120100.
  • LALOI C., HAVAUX M. (2015) Key players of singlet oxygen-induced cell death in plants. Front. Plant. Sci., 6(39). doi 10.3389/fpls.2015.00039
  • VRIET C., HENNIG L., LALOI C. (2015) Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement. Cell. Mol. Life Sci., 72,1261–1273 doi 10.1007/s00018-014-1792-z.

2014

  • CHAUVET A., TIBILETTI T., CAFFARRI S., CHERGUI M. (2014) A microfluidic flow-cell for the study of the ultrafast dynamics of biological systems. Rev. Sci. Instrum., 85:103118.
  • CAFFARRI S., TIBILETTI T., JENNINGS R.C., SANTABARBARA S. (2014) A Comparison between Plant Photosystem I and Photosystem II Architecture and Functioning. Curr Protein Pept Sci., 14, 296-331.
  • PASSARINI F., XU P., CAFFARRI S., HILLE J., CROCE R. (2014) Towards in vivo mutation analysis: Knock-out of specific chlorophylls bound to the light-harvesting complexes of Arabidopsis thaliana - The case of CP24 (Lhcb6). Biochim. Biophys. Acta, 1837(9):1500-1506.
  • ROGER M., BIASO F., CASTELLE C.J., BAUZAN M., CHASPOUL F., LOJOU E., SCIARA G., CAFFARRI S., GIUDICI-ORTICONI M., ILBERT M. (2014) Spectroscopic characterization of a green copper site in a single-domain cupredoxin. PLoS One. 2014 Jun 16;9(6):e98941. doi: 10.1371/journal.pone.0098941

2013

  • JABNOUNE M, SECCO D, LECAMPION C, ROBAGLIA C, SHU Q, POIRIER Y (2013) A rice cis-natural antisense RNA acts as a translational enhancer for its cognate mRNA and contributes to phosphate homeostasis and plant fitness. 25(10):4166-82. doi: 10.1105/tpc.113.116251.
  • MONTANE MH and MENAND B (2013) ATP-competitive mTOR kinase inhibitors delay plant growth by triggering early differentiation of meristematic cells but no developmental patterning change. Journal of Experimental Botany, doi: 10.1093/jxb/ert242.
  • BALLOTTARI M, MOZZO M, GIRARDON J, HIENERWADEL R, BASSI R. (2013) Chlorophyll triplet quenching and photoprotection in the higher plant monomeric antenna protein Lhcb5. J Phys Chem B. 117(38):11337-48. doi: 10.1021/jp402977y
  • KROKIDA A, DELIS K, GEISLER K, GARAGOUNIS C, TSIKOU D, M. PEÑA-RODRÍGUEZ L, KATSAROU D, FIELD B, OSBOURN A, PAPADOPOULOU K (2013) A metabolic gene cluster in Lotus japonicus discloses novel enzyme functions and products in triterpene biosynthesis. New Phytologist DOI: 10.1111/nph.12414
  • PIRES ND, YI K, BREUNINGER H, CATARINO B, MENAND B, DOLAN L (2013) Recruitment and remodeling of an ancient gene regulatory network during land plant evolution. Proc Natl Acad Sci U S A. 110(23):9571-6. doi: 10.1073/pnas.1305457110.
  • KHUONG TTH, CRÉTÉ P, ROBAGLIA C, CAFFARRI S (2013) Optimisation of tomato Micro-tom regeneration and selection on glufosinate/Basta and dependency of gene silencing on transgene copy number. Plant Cell Reports 32(9):1441-54
  • FLORIS M, BASSI R, ROBAGLIA C, ALBORESI A, LANET E (2013) Post-transcriptional control of light-harvesting genes expression under light stress. Plant Mol Biol 82(1-2):147-54. doi:10.1007/s11103-013-0046-z
  • DOBRENEL T, MARCHIVE C, AZZOPARDI M, CLÉMENT G, MOREAU M, SORMANI R, ROBAGLIA C, MEYER C (2013) Sugar metabolism and the plant target of rapamycin kinase: a sweet operaTOR? Front Plant Sci. 4:93. doi: 10.3389/fpls.2013.00093.

2012

  • ŠIMKOVAA K, MOREAU F, PAWLAKA P, VRIET C, BARUAH A, ALEXANDRE C, HENNIGA L, APPEL K, LALOI C (2012) Integration of stress-related and reactive oxygen species-mediated signals by Topoisomerase VI in Arabidopsis thaliana. PNAS doi: 10.1073/pnas.1202041109
  • GALKA P, SANTABARBARA S, KHUONG TT, DEGAND H, MORSOMME P, JENNINGS RC, BOEKEMA EJ, CAFFARRI S (2012) Functional Analyses of the Plant Photosystem I-Light-Harvesting Complex II Supercomplex Reveal That Light-Harvesting Complex II Loosely Bound to Photosystem II Is a Very Efficient Antenna for Photosystem I in State II. Plant Cell 24(7):2963-78
  • MOREAU M, AZZOPARDI M, CLEMENT G, DOBRENEL T, MARCHIVE C, RENNE C, MARTIN-MAGNIETTE ML, TACONNAT L, RENOU JP, ROBAGLIA C, MEYER C (2012) Mutations in the Arabidopsis Homolog of LST8/G beta L, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days. Plant Cell 24(2): 463-481
  • ROBAGLIA C, THOMAS M , MEYER C (2012) Sensing nutrient and energy status by SnRK1 and TOR kinases. Curr. Opin. Plant Biol. 15: 301-307
  • ESWARAMOORTHY S, POULAIN S, HIENERWADEL R, BREMOND N, SYLVESTER MD, ZHANG YB, BERTHOMIEU C, VAN DER LELIE D, MATIN A (2012) Crystal Structure of ChrR-A Quinone Reductase with the Capacity to Reduce Chromate. PLOS ONE 7(4): e36017
  • FIELD B and OSBOURN A (2012) Order in the playground- formation of plant gene clusters in dynamic chromosomal regions. Mobile Genetic Elements 2(1): 46-50
  • OSBOURN A, PAPADOPOULOU P, QI X, FIELD B, WEGEL E (2012) Finding and analysing plant secondary metabolic gene clusters. Method Enzymol 517:113-38. doi: 10.1016/B978-0-12-404634-4.00006-1
  • SIMKOVA, K., KIM, C., GACEK, K., BARUAH, A., LALOI, C. AND APEL, K. (2012) The chloroplast division mutant caa33 of Arabidopsis thaliana reveals a crucial impact of chloroplast homeostasis on stress acclimation and retrograde plastid-to-nucleus signaling. Plant Journal 69: 701-712
  • VITA N, BRUBACH JB, HIENERWADEL R, BREMOND N, BERTHOMIEU D, ROY P, BERTHOMIEU C (2013) Electrochemically induced far-infrared difference spectroscopy on metalloproteins using advanced synchrotron technology. Anal Chem. 85(5):2891-8. doi: 10.1021/ac303511g

2011

  • FIELD B, FISTON-LAVIER A, KEMEN A, GEISLER K, QUESNEVILLE H, AND OSBOURN A (2011) Formation of plant metabolic gene clusters within dynamic chromosomal regions. PNAS, 108:16116-21
  • INAGAKI Y-S, ETHERINGTON G, GEISLER K, FIELD B, DOKARRY M, IKEDA K, MUTSUKADO Y, DICKS J, OSBOURN A (2011) Investigation of the potential for triterpene synthesis in rice through genome mining and metabolic engineering. New Phytologist 191:432-448
  • YANG G, YI K, PIRES ND, MENAND B, DOLAN L (2011) RSL genes are sufficient for rhizoid system development in early diverging land plants. Development, 138, 2273-81
  • CAFFARRI S, BROESS K, CROCE R, van AMERONGEN H (2011). Excitation Energy Transfer and Trapping in Higher Plant Photosystem II Complexes with Different Antenna Sizes. Biophysical Journal, 100(9): 2094-103
  • DOBRENEL T, MARCHIVE C, SORMANI R, MOREAU M, MOZZO M, MONTANE MH, MENAND B, ROBAGLIA C, MEYER C(2011) Regulation of plant growth and metabolism by the TOR kinase. Biochemical Society transactions, 39(2):477-81
  • SCHEPETILNIKOV M, KOBAYASHI K, GELDREICH A, CARANTA C, ROBAGLIA C, KELLER M, RYABOVA LA. (2011). Viral factor TAV recruits TOR/S6K1 signalling to activate reinitiation after long ORF translation. EMBO Journal, doi:10.1038/emboj.2011.39.
  • SORMANI R, DELANNOY E, LAGEIX S, BITTON F, LANET E, SAEZ-VASQUEZ J, DERAGON JM, RENOU JP, ROBAGLIA C.(2011) Sublethal Cadmium Intoxication In Arabidopsis thaliana Impacts Translation at Multiple Levels. Plant Cell Physiology, 52(2):436-47.

2010

  • YI K, MENAND B, BELL E AND DOLAN L (2010). A basic helix-loop-Helix transcription factor controls cell growth in root hairs. Nature Genetics, 42, 264-7
  • OSBOURN A and FIELD B (2010). PRIMER: Operons. Nature Chemical Biology, 2010, 6. Link
  • MOZZO M, MANTELLI M, PASSARINI F, CAFFARRI S, CROCE R AND BASSI R (2010) Functional Analysis of Photosystem I Light-Harvesting Complexes (LHCA) Gene Products of Chlamydomonas reinhardtii. BBA-Bioenergetics, 1797: 212-222
  • BETTERLE N, BALLOTTARI M, HIENERWADEL R, DALL'OSTO L, BASSI R (2010) Dynamics of zeaxanthin binding to the photosystem II monomeric antenna protein Lhcb6 (CP24) and modulation of its photoprotection properties. Arch. Biochem. Biophys., 504(1): 67-77
  • CAST D, COCK M, KLOAREG B, MENAND B, RETAUX S, SCUTT C, VIALETTE-GUIRAUD A (2010) Des modèles pour comprendre l'évolution du développement des eucaryotes. Biofutur, 29/314 : 30-33

2009

  • HAVAUX M, KSAS B, SZEWCZYK A, RUMEAU D, FRANCK F, CAFFARRI S AND TRIANTAPHYLIDÈS C (2009) Vitamin B6 deficient plants display increased sensitivity to high light and photo-oxidative stress. BMC Plant Biology, 9:130
  • PASSARINI F, WIENTJES E, HIENERWADEL R AND CROCE R (2009) Molecular basis of light harvesting and photoprotection in CP24: unique features of the most recent antenna complex. J Biol Chem 284:29536-46
  • CAFFARRI S, KOURIL R, KEREÏCHE S, BOEKEMA EJ AND CROCE R (2009) Functional Architecture of Higher Plant Photosystem II Supercomplexes. EMBO J. 28, 3052-3063
  • OSBOURN A AND FIELD B (2009) Operons. Cellular and Molecular Life Sciences DOI: 10.1007/s00018-009-0114-3 Link
  • CAMPOLI C, CAFFARRI S, SVENSSON JT, BASSI R, STANCA AM, CATTIVELLI L AND CROSATTI C (2009) A Parallel Pigment and Transcriptomic Analysis of four Barley Albina and Xantha Mutants Reveals the Complex Network of the Chloroplast-Dependent Metabolism. Plant Mol. Biol. 71, 173-191
  • ALBORESI A, BALLOTTARI M, HIENERWADEL R, GIACOMETTI GM, MOROSINOTTO T (2009) Antenna complexes protect Photosystem I from Photoinhibition. BMC Plant Biology 9:71
  • FLORIS M, MAHGOUB H, LANET E, ROBAGLIA C & MENAND B (2009) Post-transcriptional regulation of gene expression in plants during abiotic stress. International Journal of Molecular Sciences, 10, 3168-85.
  • ROA H, LANG J, CULLIGAN KM, KELLER M, HOLEC S, COGNAT V, MONTANE MH, HOULNE G, CHABOUTE ME. (2009)RNR regulation in response to genotoxic stress in Arabidopsis. Plant Physiol: 10.1104/pp.109.140053
  • LANET E, DELANNOY E, SORMANI R, FLORIS M, BRODERSEN P, CRÉTÉ P, VOINNET O, ROBAGLIA C (2009). Biochemical evidence for translational repression by plant microRNAs. Plant Cell, 21(6):1762-1768.
  • BERTHOMIEU C, HIENERWADEL R (2009). Fourier Transform InfraRed (FTIR) spectroscopy. Photosynth. Res., 101(2-3):157-70.

2008

  • BONENTE G, PASSARINI P, CAZZANIGA S, MANCONE C, BUIA MC, TRIPODI M, BASSI R, CAFFARRI S (2008). The occurrence of the psbS gene product in Chlamydomonas reinhardtii and in other photosynthetic organisms and its correlation with energy quenching. Photochem Photobiol 84(6):1359-70.
  • LAGEIX S, LANET E, POUCH-PELISSIER MN, ESPAGNOL MC, ROBAGLIA C, DERAGON JM, PELISSIER T. (2008) Arabidopsis eIF2alpha kinase GCN2 is essential for growth in stress conditions and is activated by wounding. BMC Plant Biol. 24;8:134.
  • GERMAN-RETANA S, WALTER J, DOUBLET B, ROUDET-TAVERT G, NICAISE V, LECAMPION C, HOUVENAGHEL MC, ROBAGLIA C, MICHON T, LE GALL O.(2008) Mutational analysis of plant cap-binding protein eIF4E reveals key amino acids involved in biochemical functions and potyvirus infection. J Virol. 82(15):7601-12.
  • NICOLAÏ M, GALLOIS JL, ROBAGLIA C, MOURY B, PALLOIX A, CARANTA C.(2008) Natural variation and functional analyses provide evidence for co-evolution between plant eIF4E and potyviral VPg.Plant J:54(1) :56-68.
  • ALBORESI A., CAFFARRI S., NOGUE F., BASSI R. & MOROSINOTTO T. (2008) "Characterization of the Lhc superfamily in Physcomitrella patens and identification of antenna proteins associated to land environment adaptation" Plos One, 3(4): e2033 doi:10.1371/journal.pone.0002033
  • MOZZO M., DALL'OSTO L., HIENERWADEL R., BASSI R. & CROCE R (2008) Photoprotection in the antenna complexes of photosystem II - Role of individual xanthophylls in chlorophyll triplet quenching. J. Biol. Chem 283 (10): 6184-6192.
  • BONENTE G., HOWES B.D., CAFFARRI S., SMULEVICH G. & BASSI R. (2008) Interactions between the photosystem II subunit PsbS and xanthophylls as studied in vivo and in vitro. J. Biol. Chem 283, 8434-8445.

2007

  • CAFFARRI S. PASSARINI F, BASSI R & CROCE R (2007) A specific binding site for neoxanthin in the monomeric antenna proteins CP26 and CP29 of Photosystem II.FEBS Lett. 581(24):4704-10. Epub 2007 Sep 4.
  • DEPROST D, YAO L, SORMANI R, MOREAU M, LETERREUX G, NICOLAI M, BEDU M, ROBAGLIA C and MEYER C (2007) The Arabidopsis TOR kinase links plant growth, yield, stress resistance and mRNA translation. EMBO Rep. 8(9):864-70.
  • NICOLAI M., DUPRAT A., SORMANI R., RODRIGUEZ C., RONCATO M., ROLLAND N. & ROBAGLIA C. (2007) Higher plant chloroplasts import the mRNA coding for the eucaryotic translation initiation factor 4E. FEBS Lett.;581(21):3921-6
  • CROCE R, MOZZO M, MOROSINOTTO T, ROMEO A, HIENERWADEL R & BASSI R (2007) Singlet and triplet state transitions of carotenoids in the antenna complexes of higher-plant photosystem I. Biochemistry.;46(12):3846-55.
  • SORMANI R, YAO L, MENAND B, ENNAR, N, LECAMPION C, MEYER C, ROBAGLIA C (2007) Saccharomyces cerevisiae FKBP12 binds Arabidopsis thaliana TOR and its expression in plants leads to rapamycin susceptibility.BMC Plant Biol 1;7:26.