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LEMIRE

Publications

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Publié le 11 octobre 2017

2017- 2016- 2015- 2014- 2013- 2012- 2011- 2010- 2009- 2008- 2007

2017

  • Chabert N., Bonnefoy V., Achouak W. (2017) Quorum Sensing Improves Current Output with Acidithiobacillus Ferrooxidans. Microbial Biotechnology. http://dx.doi.org/10.1111/1751-7915.12797.
  • Layet C., Auffan M., Santaella C., Chevassus-Rosset C., Montes M., Ortet P., Barakat M., Collin B., Legros S., Bravin M.N., Angeletti B., Kieffer I., Proux O., Hazemann J.-L., Doelsch E. (2017) Evidence That Soil Properties and Organic Coating Drive the Phytoavailability of Cerium Oxide Nanoparticles. Environmental Science & Technology, 51, 9756–9764. http://dx.doi.org/10.1021/acs.est.7b02397.
  • Ndour P.M.S., Gueye M., Barakat M., Ortet P., Bertrand-Huleux M., Pablo A.-L., Dezette D., Chapuis-Lardy L., Assigbetsé K., Kane N.A., Vigouroux Y., Achouak W., Ndoye I., Heulin T., Cournac L. (2017) Pearl Millet Genetic Traits Shape Rhizobacterial Diversity and Modulate Rhizosphere Aggregation. Frontiers in Plant Science, 8.
  • Avellan A., Schwab F., Masion A., Chaurand P., Borschneck D., Vidal V., Rose J., Santaella C., Levard C. (2017) Nanoparticle Uptake in Plants: Gold Nanomaterial Localized in Roots of Arabidopsis Thaliana by X-Ray Computed Nanotomography and Hyperspectral Imaging. Environmental Science & Technology, 51, 8682–8691.
  • Theodorakopoulos N., Février L., Barakat M., Ortet P., Christen R., Piette L., Levchuk S., Beaugelin-Seiller K., Sergeant C., Berthomieu C., Chapon V. (2017) Soil Prokaryotic Communities in Chernobyl Waste Disposal Trench T22 Are Modulated by Organic Matter and Radionuclide Contamination. FEMS microbiology ecology.
  • Ortet P., Gallois N., Piette L., Long J., Berthomieu C., Armengaud J., Barakat M., Chapon V. (2017) Draft Genome Sequence of Microbacterium Oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil. Genome Announcements, 5.
  • Bottero J.Y., Rose J., Garidel C. de, Masion A., Deutsch T., Brochard G., Carrière M., Gontard N., Wortham H., Rabilloud T., Salles B., Dubosson M., Cathala B., Boutry D., Ereskovsky A., Auplat C., Charlet L., Heulin T., Frejafon E., Lanone S. (2017). SERENADE: safer and ecodesign research and education applied to nanomaterial development, the new generation of materials safer by design. Environ. Sci.: Nano, 4, 526–538.
  • Rimboud M., Barakat M., Bergel A., Erable B. (2017). Different methods used to form oxygen reducing biocathodes lead to different biomass quantities, bacterial communities, and electrochemical kinetics. Bioelectrochemistry, 116, 24–32.
  • Dzumedzey Y., Labille J., Cathala B., Moreau C. , Santaella C. (2017) Polysaccharide coating on environmental collectors affects the affinity and deposition of nanoparticles NanoImpact, 5, 83-91. 

2016

  • Liu W., Bertrand M., Chaneac C. , and Achouak W. (2016) TiO2 nanoparticles alter iron homeostasis in Pseudomonas brassicacearum as revealed by PrrF sRNA modulation. Environmental Science: Nano. 3(6):1473-82. doi:10.1039/C6EN00316H
  • Lounaci L, Athmani-Guemouri S, Boureghda H, Achouak W, Heulin T (2016) Suppression of crown and root rot of wheat by Paenibacillus polymyxa, a rhizobacterium isolated from wheat. Phytopathologia Mediterranea, 55(3): 355-365.
  • Avellan A, Levard C, Rose J, Auffan M, Bertrand M, Olivi L,   Santaella CAchouak W and Masion A, Influence of structural defects of Ge-imogolite nanotubes on their toxicity towards Pseudomonas brassicacearum. Environmental Science: Nano. 3:839-846  
  • Rousseau R., Santaella C., Bonnafous A., Achouak W., Godon J.-J., Delia M.-L., Bergel A. (2016) Halotolerant bioanodes : The applied potential modulates the electrochemical characteristics, the biofilm structure and the ratio of the two dominant genera. Bioelectrochemistry, ​112, 24–32. doi:10.1016/j.bioelechem.2016.06.006​​
  • Avellan A., Auffan M., Masion A., Levard C., Bertrand M., Rose J., Santaella C.Achouak W. (2016) Remote Biodegradation of Ge-Imogolite Nanotubes Controlled by the Iron Homeostasis of Pseudomonas Brassicacearum. Environmental Science & Technology, 50(14), 7791–7798. http://dx.doi.org/10.1021/acs.est.6b01455.
  • Hamidat M., Barakat M., Ortet P., Chanéac C., Rose J., Bottero J.-Y., Heulin T., Achouak W., Santaella C. (2016) Design Defines the Effects of Nanoceria at a Low Dose on Soil Microbiota and the Potentiation of Impacts by the Canola Plant. Environ. Sci. Technol., 50(13)​​, 6892–6901. doi:10.1021/acs.est.6b01056
  • Matthijs S., Brandt N., Ongena M., Achouak W., Meyer J.-M., Budzikiewicz H. (2016) Pyoverdine and histicorrugatin-mediated iron acquisition in Pseudomonas thivervalensis. Biometals, 29(3)​​, 467–485. doi:10.1007/s10534-016-9929-1.
  • Pradas Del Real A.E., Castillo-Michel H., Kaegi R., Sinnet B., Magnin V., Findling N., Villanova J., Carrière M., Santaella C., Fernández-Martı́nez A., Levard C., Sarret G. (2016) Fate of Ag-NPs in Sewage Sludge after Application on Agricultural Soils. Environmental Science & Technology, 50(4), 1759–1768. http://dx.doi.org/10.1021/acs.est.5b04550.
  • Haichar F. el Z.,Heulin T., Guyonnet J.P., Achouak W. (2016) Stable Isotope Probing of Carbon Flow in the Plant Holobiont. Current Opinion in Biotechnology, 41, 9–13. http://dx.doi.org/10.1016/j.copbio.2016.02.023.
  • Nesme J., Achouak W., Agathos S.N., Bailey M., Baldrian P., Brunel D., Frostegård Å., Heulin T., Jansson J.K., Jurkevitch E., Kruus K.L., Kowalchuk G.A., Lagares A., Lappin-Scott H.M., Lemanceau P., Le Paslier D., Mandic-Mulec I., Murrell J.C., Myrold D.D., Nalin R., Nannipieri P., Neufeld J.D., O’Gara F., Parnell J.J., Pühler A., Pylro V., Ramos J.L., Roesch L.F.W., Schloter M., Schleper C., Sczyrba A., Sessitsch A., Sjöling S., Sørensen J., Sørensen S.J., Tebbe C.C., Topp E., Tsiamis G., van Elsas J.D., van Keulen G., Widmer F., Wagner M., Zhang T., Zhang X., Zhao L., Zhu Y.-G., Vogel T.M., Simonet P. (2016) Back to the Future of Soil Metagenomics. Terrestrial Microbiology, 73. http://dx.doi.org/10.3389/fmicb.2016.00073.
  • El Khalloufi F., Oufdou K., Bertrand M., Lahrouni M., Oudra B., Ortet P.Barakat M.Heulin T.Achouak W. (2016) Microbiote shift in the Medicago sativa rhizosphere in response to cyanotoxins extract exposure. Sci Total Environ.,​ 539, ​135-142. doi:10.1016/j.scitotenv.2015.08.127​.
  • Guilbaud C., Morris C.E., Barakat M., Ortet P., Berge O. (2016). Isolation and identification of Pseudomonas syringae facilitated by a PCR targeting the whole P. syringae group. FEMS Microbiol. Ecol. 92(1). doi:10.1093/femsec/fiv146 (online: 25 November 2015​).

2015​

  • Schaack B., Liu W., Thiéry A., Auger A., Hochepied JF., Castellan M., Ebel C., Chaneac C., Achouak W.  (2015) Design of live biochip for in situ Nanotoxicology studies: a proof of concept. RSC Adv., 5, 82169–82178.​
  • Tella M, Auffan M, Brousset L, Morel E, Proux O, Chanéac C,  Angeletti B, Pailles C,  Artells E, Santaella C, Rose J, Thiéry T, J-Y. Bottero (2015) Chronic dosing of a simulated pond ecosystem in indoor aquatic mesocosms: Fate and Transport of CeO2 nanoparticles. Environmental Science: Nano. 2, 653-63.​
  • Chabert N, Amin Ali O, Achouak W (2015) All ecosystems potentially host electrogenic bacteria. Bioelectrochemistry, 106 (A) : 88–96.
  •  ​​Harfouche L.,Haichar F.Z.,  Achouack W. Small regulatory RNAs and the fine-tuning of plant-bacteria interactions. New Phytol., 206(1):98-106.
  • Ortet P, Whitworth DE, Santaella CAchouak WBarakat M. P2CS: updates of the prokaryotic two-component systems database. Nucleic Acids Res. 2015 Jan 28;43(Database issue): D536-41
  • ​Bouthier de la Tour C., Blanchard L., Dulermo R.Ludanyi M., Devigne D., Armengaud J., Sommer S., De Groot A. (2015) « the abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA » Microbiology 2015 Sep 18. doi: 10.1099/mic.0.000186​12596​​

201​​4

  • Auffan M, Tella M, Santaella C, Brousset L, Paillès C, Barakat M, Espinasse B, Artells E, Issartel J, Masion A, Rose J, Wiesner MR, Achouak W, Thiéry A, Bottero JY
    An adaptable mesocosm platform for performing integrated assessments of nanomaterial risk in complex environmental systems. Sci Rep 4:5608.
  • Barton LE, Auffan M, Bertrand M, Barakat M, Masion A, Santaella C, Borschneck D, Olivi L, Roche N, Wiesner MR, Bottero JY
    The transformation of pristine and citrate-functionalized CeO2 nanoparticles in a laboratory scale activated sludge reactor. Environ Sci Technol 48(13):7289-96.
  • Haichar FZ, Santaella C, Heulin T, Achouak W
    Root exudates mediated interactions belowground. Soil Biol Biochem 77:69-80.
  • Ketep SF, Bergel A, Bertrand M, Barakat M, Achouak W, Fourest E
    Forming microbial anodes with acetate addition decreases their capability to treat raw paper mill effluent. Bioresour Technol 164C:285-91.
  • Ludanyi M, Blanchard L, Dulermo R, Brandelet G, Bellanger L, Pignol D, Lemaire D, de Groot A
    Radiation response in Deinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO. Mol Microbiol​, 94(2):434-449.
  • Rousseau R, Santaella C,Achouak W, Godon JJ, Bonnafous A, Bergel A, Delia ML
    Correlation of the electrochemical kinetics of high-salinity-tolerant bioanodes with the structure and microbial composition of the biofilm. ChemElectroChem, 1: 1966–1975. doi:10.1002/celc.201402153​. 
  • Santaella C, Allainmat B, Simonet F, Chanéac C, Labille J, Auffan M, Rose J, Achouak W
    Aged TiO2-based nanocomposite used in sunscreens produces single oxygen under long-wave UV and sensitizes Escherichia coli to cadmium. Environ Sci Technol 48(9):5245-53.
  • Tella M, Auffan M, Brousset L, Issartel J, Kieffer I, Pailles C, Morel E, Santaella C, Angeletti B, Artells E, Rose J, Thiery A, Bottero JY
    Transfer, transformation and impacts of ceria nanomaterials in aquatic mesocosms simulating a pond ecosystem. Environ Sci Technol 48(16):9004–9013​.

201​​3

  • Barakat M, Ortet P, Whitworth DE
    P2RP: a web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes. BMC Genomics 14(1):269.
  • Bougdour A, Durandau E, Brenier-Pinchart MP, Ortet P, Barakat M, Kieffer S, Curt-Varesano A, Curt RL, Coute Y, Pelloux H, Hakimi MA
    Host cell subversion by Toxoplasma GRA16, a HAUSP- and PP2A-interacting protein exported to the host cell nucleus. Cell Host Microbe 13(4):489-500.
  • Cercado B, Byrne N, Bertrand M, Achouak W, Bergel A.
    Garden compost inoculum leads to microbial bioanodes with potential-independent characteristics. Bioresour Technol 134:276-84.
  • Dedieu A, Sahinovic E, Guèrin P, Blanchard L, Fochesato S, Meunier B, de Groot A, Armengaud J
    Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation. Proteome Sci 11(1):3.
  • Haichar FZ, Fochesato S, Achouak W
    Host-plant specific control of 2,4-diacétylphloroglucinol production in the rhizosphere. Agronomy 3:621-631.
  • Ketep S, A Bergel, Bertrand M, Achouak W, Fourest E
    Sampling location of the inoculum is crucial in designing anodes for microbial fuel cells. Biochem Eng J 73:12-6.
  • Ketep S, Bergel A, Bertrand M, Achouak W, Fourest E
    Lowering the applied potential during successive scratching/re-inoculation improves the performance of microbial anodes for microbial fuel cells. Bioresour Technol 127:448-55.
  • Plancot B, Santaella C, Jaber R, Kiefer-Meyer MC, Follet-Gueye ML, Leprince J, Gattin I, Souc C, Driouich A, Vicré-Gibouin M
    Deciphering the responses of root-border cells of Arabidopsis thaliana and Linum usitatissimum to pathogen-derived elicitors. Plant Physiol 163(4):1584-97.

 

2012

  • Haichar FZ, Roncato MA, Achouak W
    Stable isotope probing of bacterial community structure and gene expression in the rhizosphere of Arabidopsis thaliana FEMS Microbiol Ecol 81(2):291-302.
  • Lalaouna D, Fochesato S, Sanchez L, Schmitt-Kopplin P, Haas D, Heulin T, Achouak W
    Regulatory RNAs control phenotypic switching in Pseudomonas brassicacearum. Appl Environ Microbiol 78:1658-45.
  • Lalaouna D, Fochesato S, Barakat M, Ortet P, Achouak W
    Multiple transcriptional activating sequences regulate the RsmZ regulatory small RNA of Pseudomonas brassicacearum. J Bacteriol 194(18):4888-93.
  • Nercessian O, Parot S, Délia ML, Bergel A, Achouak W
    Harvesting electricity with Geobacter bremensis isolated from compost. PLoS ONE 7(3):e34216.
  • Thiéry A, De Jong L, Issartel J, Moreau X, Saez G, Barthélémy P, Bestel I, Santaella C, Achouak W, Auffan M, Rose J, Bottero JY
    Effects of metallic and metal oxide nanoparticles in aquatic and terrestrial food chains. Biomarkers responses in invertebrates and bacteria Int J Nanotechnol 9(3):181-203.
  • Roumagnac P, Richaud P, Barakat M, Ortet P, Roncato MA, Heulin T, Peltier G, Achouak W, Cournac L
    Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize and wheat.MicrobiologyOpen 1:349-61. 
  • Bal A, Anand R., Berge O., and C. P. Chanway
    Isolation and identification of diazotrophic bacteria from internal tissues of Pinus contorta and Thuja plicata. Canadian Journal of Forest Research 42: 807-813.
  • Ortet P, De Luca G, Whitworth DE, Barakat M.
    P2TF: a comprehensive resource for analysis of prokaryotic transcription factors. BMC Genomics 15;13:628.
  • Toueille M, Mirabella B, Guérin P, Bouthier de la Tour C, Boisnard S, Nguyen HH, Blanchard L, Servant P, de Groot A, Sommer S, Armengaud J.
    A comparative proteomic approach to better define Deinococcus nucleoid specificities. J Proteomics. 75:2588-600.

 

2011

  • De Luca G, Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Maréchal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Méjean V, DuBow M, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Verméglio A, Achouak W, Heulin T
    The cyst-dividing bacterium Ramlibacter tataouinensis genome reveals a well-stocked toolbox for adaptation to a desert environment. PLoS ONE 6(9):e23784. 
  • Mondani L, Benzerara K, Carrière M, Christen R, Mamindy-Pajany Y, Février L, Marmier N, Achouak W, Nardoux P, Berthomieu C, Chapon V
    Influence of uranium on bacterial communities: a comparison of natural uranium-rich soils with controls. PLoS ONE 6(10):e25771.
  • Ortet P, Barakat M, Lalaouna D, Fochesato S, Barbe V, Santaella C, Heulin T, Achouak W
    Complete genome sequence of a beneficial plant-root associated bacterium Pseudomonas brassicacearum. J Bacteriol 193(12):3146
  • Schüe M, Fekete A, Ortet P, Brutesco C, Heulin T, Kopplin-Schmidt P, Achouak W, Santaella C
    Modulation of metabolism and switching to biofilm formation prevail over exopolysaccharide production in the response of Rhizobium alamii to cadmium. PLoS ONE 6(11):e26771.
  • Barakat M, Ortet P, Whitworth DE.
    P2CS: a database of prokaryotic two-component systems. Nucleic Acids Res. 39(Database issue):D771-6.

 

2010

  • Arsène-Ploetze F, Koechler S, Marchal M, Coppee JY, Chandler M, Bonnefoy V, Barakat M, Barbe V, Battaglia-Brunet F, Brochier-Armanet C, Bruneel O, Bryan CG, Cleiss J, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Patricia Siguier P, David D, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin PN.
  • Structure, function and evolution of Thiomonas spp. inferred from genome sequencing and comparative genomic analysis. PloS Genet, 2010, 6(2): e1000859.
  • Barakat M, Ortet P, Whitworth DE.
  • P2CS: a database of prokaryotic two-component systems. Nucleic Acids Res. 2010, in press.
  • Baudet M, Ortet P, Gaillard JC, Fernandez B, Guerin P, Enjalbal C, Subra G, De Groot A, Barakat M, Dedieu A, Armengaud J.
  • Proteomic-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons. Mol Cell Prot, 2010, 9(2):415-26.
  • Braun L, Cannela D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O, Hakimi MA.
  • A sophisticated small RNA repertoire is generated by a plant/fungal-like processing machinery and effected by a metazoan-like Argonaute complex in the single-cell Human parasite Toxoplasma gondii. PloS Pathog., 2010, 6(5):e1000920.
  • Gommeaux M, Barakat M, Montagnac G, Christen R, Guyot F, Heulin T.
  • Mineral and bacterial diversities of desert sand grains from South-East Morocco. Geomicrobiol J, 2010, 27:76-92.
  • Vandecandelaere I, Nercessian O, Faimali M, Segaert E, Mollica A, Achouak W, De Vos P, Vandamme P.
  • Bacterial diversity of the cultivable fraction of a marine electroactive biofilm. Bioelectrochemistry, 2010, 78(1):62-66.

 


Publications impliquant des membres du laboratoire avant leur arrivée au LEMIRE :

  • Jensen MR, Bernado P, Houben K, Blanchard L, Marion D, Ruigrok RWH, Blackledge M. Structural disorder within Sendai virus nucleoprotein and phosphoprotein: Insight into the structural basis of molecular recognition. Protein Pept Lett., 2010, 17(8):952-960.

2009

  • Barakat M*, Ortet P*, Jourlin-Castelli C, Ansaldi C, Méjean V, Whitworth DE. P2CS: a wiki-like annotatable database for prokaryotic two-component systems, BMC Genomics, 2009, 10(1):315 (*These two authors contributed equally to this work)
  • Basile-Doelsch I, Brun T, Borschneck D, Marol C, Balesdent J. Effect of land use on organic matter stabilized in organo-mineral complexes, Geoderma, 2009, 151 (3-4):77-86
  • Berge O, Lodhi A, Brandelet G, Santaella C, Roncato MA, Christen R, Heulin T, Achouak W. Rhizobium alamii sp. nov., an exopolysaccharide producing species isolated from legume and non-legume rhizospheres, Int J Syst Evol Microbiol., 2009, 59(Pt 2):367-372
  • Bougdour A, Maubon D, Baldacci P, Ortet P, Bastien O, Bouillon A, Barale JC, Pelloux H, Menard R, Hakimi MA. Drug-inhibition of HDAC3 and epigenetic control of differentiation in Apicimplexa parasites, J Exp Med., 2009, 206(4):953-966
  • Bressan M, Roncato MA, Bellvert F., Comtes G, Haichar FZ, Achouak W, Berge O. Exogenous glucosinolate produced by Arabidopsis thaliana impacts microbial populations inhabiting rhizosphere and roots, ISME J., 2009, 3(11):1243-1257
  • De Groot A, Dulermo R, Ortet P, Blanchard L, Guérin P, Fernandez B, Vacherie B, Dossat C, Jolivet E, Siguier P, Chandler M, Barakat M, Dedieu A, Barbe V, Heulin T, Sommer S, Achouak W, Armengaud J. Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti, PLoS Genetics, 2009, 5(3):e1000434
  • Dulermo R, Fochesato S, Blanchard L, De Groot A. Mutagenic lesion-bypass and two functionally different RecA proteins in Deinococcus deserti, Mol Microbiol., 2009, 74(1) 194-208
  • Erable B, Roncato MA, Achouak W, Bergel A. Sampling natural biofilms: a new route to build efficient microbial anodes, Environ Sci Technol., 2009, 43(9):3194-3199
  • Parot S, Nercessian O, Délia ML, Achouak W, Bergel A. Electrochemical checking of aerobic isolates from electrochemically active biofilms formed in compost, J Appl Microbiol., 2009, 106(4):1350-1359
  • Sautel CF*, Ortet P*, Saksouk N, Kieffer S, Garin J, Bastien O, Hakimi MA.The histone methylase KMTox interacts with the redox-sensor peroxiredoxin-1 and targets genes involved in Toxoplasma gondii antioxidant defences, Mol Microbiol., 2009, 71(1): 212-226 (*These two authors contributed equally to this work
  • Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Mollica A, Faimali M, Vandamme P. Nautella italica gen; nov., sp. nov., isolated from a marine electroactive biofilm, Int J Syst Evol Microbiol., 2009, 59(Pt 4):811-817
  • Vidal C, Chantreuil C, Berge O, Mauré L, Escarré J, Béna G, Brunel B, Cleyet-Marel JC. Mesorhizobium metallidurans sp. nov., a novel metal-resistant symbiont of Anthyllis vulneraria growing on metallicolous soil in Languedoc, France, Int J Syst Evol Microbiol., 2009, 59(Pt 4):850-855
  • Vujičić-Žagar A, Dulermo R, Le Gorrec M, Vannier F, Servant P, Sommer S, De Groot A, Serre L. Crystal structure of the IrrE protein, a central regulator of DNA damage repair in Deinococcaceae, J Mol Biol., 2009, 386(3):704-716

 


Publications impliquant des personnes du laboratoire avant leur arrivée au LEMiRE :

  • Borel F, De Groot A, Juillan-Binard C, De Rosny E, Laudet V, Pebay-Peyroula E, Fontecilla-Camps JC, Ferrer JL. Crystal structure of the ligand-binding domain of the retinoid X receptor from the ascidian Polyandrocarpa misakiensis, Proteins, 2009, 4:538-542
  • Rasia RM, Noirclerc-Savoye M, Bologna NG, Gallet B, Plevin MJ, Blanchard L, Palatnik JF, Brutscher B, Vernet T, Boisbouvier J. Parallel screening and optimization of protein constructs for structural studies, Protein Sci., 2009, 18(2):434-439

2008

  • Auffan M, Achouak W, Rose J, Roncato MA, Chanéac C, Waite DT, Masion A, Woisik J, Wiesner M, Bottero JY. Relation between the redox state of iron-based nanoparticles and their cytotoxicity towards Escherichia coli, Environ Sci Technol, 2008, 42(17):6730-6735
  • Badiane N'Dour NY, Achouak W, Christen R, Heulin T, Brauman A, Chotte JL. Characteristics of microbial habitats of a tropical soil under different fallow management, Appl Soil Ecol., 2008, 38:51-61
  • Darcheville O, Février L, Haichar FZ, Berge O, Martin-Garin A, Renault P. Aqueous, solid and gaseous partitioning of selenium in an oxic sandy soil under different microbiological states, J Environ Radioactiv., 2008, 99(6):981-992
  • Gutsche I, Vujičić-Žagar A, Siebert X, Servant P, Vannier F, Castaing B, Gallet B, Heulin T, De Groot A, Sommer S, Serre L. Complex oligomeric structure of a truncated DdrA: a protein required for the extreme radiotolerance of Deinococcus, Biochim Biophys Acta, 2008, 1784(7-8):1050-1058
  • Haichar FZ, Marol C, Berge O, Rangel-Castro I, Prosser JI, Balesdent J, Heulin T, Achouak W. Plant host habitat and root exudates shape soil microbial community structure, ISME J., 2008, 2(12):1221-1230
  • Hu GQ, Zheng X, Yang YF, Ortet P, She ZS, Zhu H. ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes, Nucleic Acids Res., 2008, 36(Database issue): D114-9
  • Pagès D, Rose J, Conrod S, Cuiné S, Carrier P, Heulin T, Achouak W. Heavy metal tolerance in Stenotrophomonas maltophilia, PLoS ONE, 2008, 3(2):e1539
  • Santaella C, Schüe M, Berge O, Heulin T, Achouak W. The exopolysaccharide of Rhizobium sp. YAS34 is not necessary for biofilm formation on Arabidopsis thaliana and Brassica napus roots but contributes to root colonization, Environ Microbiol., 2008, 10(8):2150-2163
  • Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Faimali M, Vandamme P. Ruegeria scottomollicae sp. nov., isolated from a marine electroactive biofilm, Int J Syst Evol Microbiol., 2008, 58:2726-2733
  • Vandecandelaere I, Nercessian O, Segaert E, Achouak W, Mollica A, Faimali M, De Vos P, Vandamme P. Alteromonas genovensis sp. nov., isolated from a marine electroactive biofilm and emended description of Alteromonas macleodii Baumann et al. 1972 (Approved lists 1980), Int J Syst Evol Microbiol., 2008, 58:2589-2596

 


Publications impliquant des membres du laboratoire avant leur arrivée au LEMIRE :

  • De Rosny E, De Groot A, Jullian-Binard C, Borel F, Suarez C, Le Pape L, Fontecilla-Camps JC, Jouve HM. DHR51, the Drosophila melanogaster homologue of the human photoreceptor cell-specific nuclear receptor, is a thiolate heme-binding protein, Biochemistry, 2008, 47(50):13252-13260
  • Jensen MR, Houben K, Lescop E, Blanchard L, Ruigrok RW, Blackledge M. Quantitative conformational analysis of partially folded proteins from residual dipolar couplings: application to the molecular recognition element of Sendai virus nucleoprotein, J Am Chem Soc., 2008, 130(25):8055-8061

2007

  • Bernard L, Mougel C, Maron PA, Nowak V, Leveque J, Henault C, Haichar FZ, Berge O, Marol C, Balesdent J, Gibiat F, Lemanceau P, Ranjard L. Dynamics and identification of soil microbial populations actively assimilating carbon from 13C-labelled wheat residue as estimated by DNA- and RNA-SIP techniques, Environ Microbiol., 2007, 9(3):752-764
  • Derrien D, Marol C, Balesdent J. Microbial biosyntheses of individual neutral sugars among sets of substrates and soils, Geoderma, 2007, 139(1-2):190
  • Haichar FZ, Achouak W, Christen R, Heulin T, Marol C, Marais MF, Mougel C, Ranjard L, Balesdent J, Berge O. Identification of cellulolytic bacteria in soil by stable isotope probing, Environ Microbiol., 2007, 9(3):625-634.
  • Muller D, Medigue C, Koechler S, Barbe V, Barakat M, Talla E, Bonnefoy V, Krin E, Arsene-Ploetze F, Carapito C, Chandler M, Cournoyer B, Cruveiller S, Dossat C, Duval S, Heymann M, Leize E, Lieutaud A, Lievremont D, Makita Y, Mangenot S, Nitschke W, Ortet P, Perdrial N, Schoepp B, Siguier P, Simeonova DD, Rouy Z, Segurens B, Turlin E, Vallenet D, Dorsselaer AV, Weiss S, Weissenbach J, Lett MC, Danchin A, Bertin PN. A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments, PLoS Genet., 2007, 3(4):e53
  • Pagès D*, Sanchez L*, Conrod S, Gidrol X, Fekete A, Schmitt-Kopplin P, Heulin T, Achouak W. Exploration of intraclonal adaptation mechanisms of Pseudomonas brassicacearum facing cadmium toxicity, Environ Microbiol., 2007, 9(11):2820-2835
  • Ricaud L, Proux C, Renou JP, Pichon O, Fochesato S, Ortet P, Montané MH. ATM-mediated transcriptional and developmental responses to gamma-rays in Arabidopsis, PLoS ONE, 2007, 2(5):e430

 


Publications impliquant des membres du laboratoire avant leur arrivée au LEMiRE

  • Arts J*, De Groot A*, Ball G, Durand E, Khattabi ME, Filloux A, Tommassen J, Koster M. Interaction domains in the Pseudomonas aeruginosa type II secretory apparatus component XcpS (GspF), Microbiology, 2007, 153(Pt 5):1582-1592 (*These two authors contributed equally to this work)
  • Houben K, Marion D, Tarbouriech N, Ruigrok RW, Blanchard L. Interaction of the C-terminal domains of sendai virus N and P proteins: comparison of polymerase-nucleocapsid interactions within the paramyxovirus family, J Virol., 2007, 81(13):6807-6816
  • Houben K, Blanchard L, Blackledge M, Ruigrok RW, Marion D. Intrinsic dynamics of the partly unfolded PX domain from the Sendai virus RNA polymerase co-factor P, Biophys J., 2007, 93:2830-2844.
  • Pannetier N, Houben K, Blanchard L, Marion D. Optimized 3D-NMR sampling for resonance assignment of partially unfolded proteins, J Magn Reson., 2007, 186(1):142-149
  • Sounier R, Blanchard L, Wu Z, Boisbouvier J. High-accuracy distance measurement between remote methyls in specifically protonated proteins, J Am Chem Soc., 2007, 129(3):472-473